Index

C

check_exon_overlap() (in module DOLPHIN.preprocess.generate_exon_gtf)

combine_saved_batches() (in module DOLPHIN.preprocess.generate_exon_gtf)

D

DOLPHIN.model.run_model module

E

exon_uniq() (in module DOLPHIN.preprocess.generate_exon_gtf)

G

generate_adj_index_table() (in module DOLPHIN.preprocess.generate_adj_index)

generate_adj_metadata_table() (in module DOLPHIN.preprocess.generate_adj_index) generate_nonoverlapping_exons() (in module DOLPHIN.preprocess.generate_exon_gtf)

M

module DOLPHIN.model.run_model

P

prepare_exon_gtf() (in module DOLPHIN.preprocess.generate_exon_gtf)

R

run_adjacency_combination() (in module DOLPHIN.graph_generation.process_adjacency_matrix) run_adjacency_compress_combination() (in module DOLPHIN.graph_generation.process_adjacency_matrix_compress_combine) run_adjacency_compression() (in module DOLPHIN.graph_generation.process_adjacency_matrix_compress) run_adjacency_hvg() (in module DOLPHIN.graph_generation.process_adjacency_hvg) run_adjacency_matrix_final() (in module DOLPHIN.graph_generation.process_adjacency_matrix_final) run_convert_psi() (in module DOLPHIN.AS.convert_psi_to_h5ad) run_differential_as() (in module DOLPHIN.AS.generate_differential_as) run_DOLPHIN() (in module DOLPHIN.model.run_model) run_edeg() (in module DOLPHIN.EDEG.generate_EDEG) run_feature_combination() (in module DOLPHIN.graph_generation.process_feature_matrix)

run_feature_hvg() (in module DOLPHIN.graph_generation.process_feature_hvg) run_find_neighbor() (in module DOLPHIN.cell_reads_aggregation.find_cell_neighbor) run_h5ad_rds() (in module DOLPHIN.EDEG.call_convert) run_jdeg() (in module DOLPHIN.EDEG.generate_JDEG) run_modality_ohe() (in module DOLPHIN.AS.convert_modality_ohe) run_model_input() (in module DOLPHIN.graph_generation.process_graph_final) run_parallel_gene_processing() (in module DOLPHIN.graph_generation.preprocess_raw_reads) run_psi_random() (in module DOLPHIN.AS.convert_random_psi) run_raw_gene() (in module DOLPHIN.graph_generation.process_raw_gene) run_reads_aggregation() (in module DOLPHIN.cell_reads_aggregation.process_reads_aggregation) run_reads_count() (in module DOLPHIN.cell_reads_aggregation.get_single_bam_reads)

S

save_by_batch() (in module DOLPHIN.preprocess.generate_exon_gtf)

save_gtf_outputs() (in module DOLPHIN.preprocess.generate_exon_gtf)